The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani

Malaysia is a major importer of commodity crops such as maize and soybean. Importationof genetically-modified (GM) crops for the purpose of planting or food, feed and processing (FFP) requires approval from the National Biosafety Board (NBB). Most of the imported maize and soybean are GM varieties,...

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Main Author:	Aswani, Siti Aisya
Format:	Thesis
Language:	English
Published:	2022
Subjects:	Angiosperms SB Plant culture
Online Access:	https://ir.uitm.edu.my/id/eprint/75754/1/75754.pdf
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spelling	my-uitm-ir.757542023-04-04T00:43:57Z The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani 2022 Aswani, Siti Aisya Angiosperms SB Plant culture Malaysia is a major importer of commodity crops such as maize and soybean. Importationof genetically-modified (GM) crops for the purpose of planting or food, feed and processing (FFP) requires approval from the National Biosafety Board (NBB). Most of the imported maize and soybean are GM varieties, and some of these are modified using multiple transgene inserts ('stacked events'). The risk assessment process for these cropsis complicated, as the presence of two or several transgenes in one organism can lead to interactions and unintended effects, which may not be immediately evident. To overcomethis problem, metabolomics profiling was proposed for immediate analysis on risk assessment of GM crops. These 'fingerprinting' techniques are data-rich and allow for the comparison of differences in the entire metabolite profiles and may provide useful insights in the evaluation of stacked events GM crops. This study aims to evaluate if metabolomics can detect differences between a GM plant and its non-GM near isogenic counterpart, and if this analysis can detect unintended effects of GM soybean with stacked events under controlled environments. GM soybeans with single Pat and CrylAb transgenes and stacked Pat-CrylAb transgenes were constructed in the same genetic background and grown under controlled conditions in the laboratory, and metabolomics analysis were then performed using leaf samples. The data from principle component analysis (PCA) by Metaboanalyst software indicate that levels of certain metabolites are significantly different between the non-GM and all GM samples, and data analysis can differentiate the metabolome profiles. The first two components in PCA analysis could differentiate about 50% of the variation between the GM and non-GM soybeans, while the best separation is at 80% or more. The analysis between single events and stacked events GM soybeans however did not result in clear differentiation between these samples,and the first two PCA components could at most account for 36.5 % of the difference. It is likely that intrinsic biological variations among the samples are large and obscured any differences due to GM. Thus, metabolomics data is not expected to add value to the risk assessment process for evaluation of GM crops with stacked events. 2022 Thesis https://ir.uitm.edu.my/id/eprint/75754/ https://ir.uitm.edu.my/id/eprint/75754/1/75754.pdf text en public masters Universiti Teknologi MARA (UiTM) Faculty of Applied Sciences Abdul Aziz, Aziyah
institution	Universiti Teknologi MARA
collection	UiTM Institutional Repository
language	English
advisor	Abdul Aziz, Aziyah
topic	Angiosperms SB Plant culture
spellingShingle	Angiosperms SB Plant culture Aswani, Siti Aisya The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani
description	Malaysia is a major importer of commodity crops such as maize and soybean. Importationof genetically-modified (GM) crops for the purpose of planting or food, feed and processing (FFP) requires approval from the National Biosafety Board (NBB). Most of the imported maize and soybean are GM varieties, and some of these are modified using multiple transgene inserts ('stacked events'). The risk assessment process for these cropsis complicated, as the presence of two or several transgenes in one organism can lead to interactions and unintended effects, which may not be immediately evident. To overcomethis problem, metabolomics profiling was proposed for immediate analysis on risk assessment of GM crops. These 'fingerprinting' techniques are data-rich and allow for the comparison of differences in the entire metabolite profiles and may provide useful insights in the evaluation of stacked events GM crops. This study aims to evaluate if metabolomics can detect differences between a GM plant and its non-GM near isogenic counterpart, and if this analysis can detect unintended effects of GM soybean with stacked events under controlled environments. GM soybeans with single Pat and CrylAb transgenes and stacked Pat-CrylAb transgenes were constructed in the same genetic background and grown under controlled conditions in the laboratory, and metabolomics analysis were then performed using leaf samples. The data from principle component analysis (PCA) by Metaboanalyst software indicate that levels of certain metabolites are significantly different between the non-GM and all GM samples, and data analysis can differentiate the metabolome profiles. The first two components in PCA analysis could differentiate about 50% of the variation between the GM and non-GM soybeans, while the best separation is at 80% or more. The analysis between single events and stacked events GM soybeans however did not result in clear differentiation between these samples,and the first two PCA components could at most account for 36.5 % of the difference. It is likely that intrinsic biological variations among the samples are large and obscured any differences due to GM. Thus, metabolomics data is not expected to add value to the risk assessment process for evaluation of GM crops with stacked events.
format	Thesis
qualification_level	Master's degree
author	Aswani, Siti Aisya
author_facet	Aswani, Siti Aisya
author_sort	Aswani, Siti Aisya
title	The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani
title_short	The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani
title_full	The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani
title_fullStr	The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani
title_full_unstemmed	The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani
title_sort	evaluation of metabolites profiling in genetically modified soybean with stacked event / siti aisya aswani
granting_institution	Universiti Teknologi MARA (UiTM)
granting_department	Faculty of Applied Sciences
publishDate	2022
url	https://ir.uitm.edu.my/id/eprint/75754/1/75754.pdf
_version_	1783736080399335424

The evaluation of metabolites profiling in genetically modified soybean with stacked event / Siti Aisya Aswani

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