Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur

Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur

Respiratory Syncytial virus (RSV) is one of the most important causes of lower viral respiratory tract infection resulting in hospital admission among infants and early childhood worldwide. The virus is a seasonal virus, with annual outbreaks occurring during the winter in temperate climates and...

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Main Author: Gunasagaran, Vinomarlini
Format: Thesis
Language:English
English
Published: 2005
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Online Access:http://psasir.upm.edu.my/id/eprint/6377/1/FPSK%28M%29_2005_25.pdf
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spelling my-upm-ir.63772023-10-26T02:21:08Z Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur 2005-08 Gunasagaran, Vinomarlini Respiratory Syncytial virus (RSV) is one of the most important causes of lower viral respiratory tract infection resulting in hospital admission among infants and early childhood worldwide. The virus is a seasonal virus, with annual outbreaks occurring during the winter in temperate climates and during the rainy season in tropical climates. The main objective of this study was to determine the prevalence of RSV group A and B in the Klang Valley area by using Polymerase Chain Reaction (PCR) as a rapid and simultaneous detection of RSV. In this study, Polymerase Chain Reaction (PCR) method was used to detect the RSV and seminested PCR was used to subtype RSV into groups. This method is more sensitive and reliable compared to the current method used for detecting RSV which is by using direct immunofluorescence immunoassay. The detection and subtyping of RSV both used the amplification of F and the G genes of RSV. The primer from the F gene region was used as the antisense primer for both detecting and subtyping while primer from different parts of the G gene region were used as the sense primer for detecting and subtyping of RSV respectively. Random Amplified Polymorphic DNA (RAPD) technique was performed in this research to study the diversity of twenty RSV isolates. Four out of fifteen primers that were screened for reproducible band yielded clear multiple bands. According to the dendrograrn generated from the RAPDistance software program, RSV isolates were distinctly separated into their own groups based on the year of isolation. The percentage of similarity among these isolates ranged from 33% to 95% while the Nei and Li's genetic distance obtained ranged from 0.0333 to 0.471. The data obtained from this study only covers the Klang Valley area as all of the samples were collected from patients that were admitted in the pediatric ward of University Malaya Medical Center, Kuala Lumpur. All the samples were obtained fiom September 2002 until March 2004. The samples were collected from patients age ranging from one month to one year. Out of the twenty RSV samples obtained, thirteen of the RSV isolates were from the male patients and seven were from the female patients. The highest rate of infection occurred in the Malay community followed by the Chinese and the Indian. The chi-square test was done in order to determine whether the clinical data such as age, gender and the ethnicity was significant with the RSV infection. This study shows that, the age, gender and the ethnicity of the patients were not significant and therefore, no relationship could be observed between the demographic data and the RSV infection. From this study, RSV was successfully detected in 20 samples by PCR method. The F and G genes were amplified to detect and subtype RSV into groups A and B. The incidence of RSV A was much higher from September 2002 until March 2004 compared to the RSV B. Therefore, RSV A is prevalent in the Klang Valley area. 2005-08 Thesis http://psasir.upm.edu.my/id/eprint/6377/ http://psasir.upm.edu.my/id/eprint/6377/1/FPSK%28M%29_2005_25.pdf text en public masters Universiti Putra Malaysia Faculty Medicine and Health Sciences Sekawi, Zamberi English
institution Universiti Putra Malaysia
collection PSAS Institutional Repository
language English
English
advisor Sekawi, Zamberi
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Gunasagaran, Vinomarlini
Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur
description Respiratory Syncytial virus (RSV) is one of the most important causes of lower viral respiratory tract infection resulting in hospital admission among infants and early childhood worldwide. The virus is a seasonal virus, with annual outbreaks occurring during the winter in temperate climates and during the rainy season in tropical climates. The main objective of this study was to determine the prevalence of RSV group A and B in the Klang Valley area by using Polymerase Chain Reaction (PCR) as a rapid and simultaneous detection of RSV. In this study, Polymerase Chain Reaction (PCR) method was used to detect the RSV and seminested PCR was used to subtype RSV into groups. This method is more sensitive and reliable compared to the current method used for detecting RSV which is by using direct immunofluorescence immunoassay. The detection and subtyping of RSV both used the amplification of F and the G genes of RSV. The primer from the F gene region was used as the antisense primer for both detecting and subtyping while primer from different parts of the G gene region were used as the sense primer for detecting and subtyping of RSV respectively. Random Amplified Polymorphic DNA (RAPD) technique was performed in this research to study the diversity of twenty RSV isolates. Four out of fifteen primers that were screened for reproducible band yielded clear multiple bands. According to the dendrograrn generated from the RAPDistance software program, RSV isolates were distinctly separated into their own groups based on the year of isolation. The percentage of similarity among these isolates ranged from 33% to 95% while the Nei and Li's genetic distance obtained ranged from 0.0333 to 0.471. The data obtained from this study only covers the Klang Valley area as all of the samples were collected from patients that were admitted in the pediatric ward of University Malaya Medical Center, Kuala Lumpur. All the samples were obtained fiom September 2002 until March 2004. The samples were collected from patients age ranging from one month to one year. Out of the twenty RSV samples obtained, thirteen of the RSV isolates were from the male patients and seven were from the female patients. The highest rate of infection occurred in the Malay community followed by the Chinese and the Indian. The chi-square test was done in order to determine whether the clinical data such as age, gender and the ethnicity was significant with the RSV infection. This study shows that, the age, gender and the ethnicity of the patients were not significant and therefore, no relationship could be observed between the demographic data and the RSV infection. From this study, RSV was successfully detected in 20 samples by PCR method. The F and G genes were amplified to detect and subtype RSV into groups A and B. The incidence of RSV A was much higher from September 2002 until March 2004 compared to the RSV B. Therefore, RSV A is prevalent in the Klang Valley area.
format Thesis
qualification_level Master's degree
author Gunasagaran, Vinomarlini
author_facet Gunasagaran, Vinomarlini
author_sort Gunasagaran, Vinomarlini
title Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur
title_short Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur
title_full Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur
title_fullStr Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur
title_full_unstemmed Prevalence of Genetic Diversity between Group A and Group B of Respiratory Syncytial Virus Isolated From Hospitalized Patients in a Teaching Hospital in Kuala Lumpur
title_sort prevalence of genetic diversity between group a and group b of respiratory syncytial virus isolated from hospitalized patients in a teaching hospital in kuala lumpur
granting_institution Universiti Putra Malaysia
granting_department Faculty Medicine and Health Sciences
publishDate 2005
url http://psasir.upm.edu.my/id/eprint/6377/1/FPSK%28M%29_2005_25.pdf
_version_ 1783725739125768192

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